Agro-technologies for greenhouse gases mitigation in flooded rice fields for promoting climate smart agriculture.

We investigated methane (CH4) and nitrous oxide (N2O), two important greenhouse gases (GHGs) emissions using the closed chamber method from a flooded rice field in Brahmaputra valley of Assam, northeast part of India. We tried to understand the factors responsible for the emission and identify appropriate agro-technologies for their mitigation. Various factors like water level, drainage management, soil organic carbon management, crop management, fertilizer amendment, cultivar type etc. affect the GHG production and emission from the flooded rice soil. In this study, six treatments were employed, namely, farmer's practice (FP), recommended fertilizer dosage (RDF), direct seeded rice (DSR), intermittent wetting drying (IWD), use of efficient methanotrophs (MTH), and use of ammonium sulfate as a nitrogen source for real-time nitrogen management using leaf color chart, (AS). GHG flux was measured through the static closed chamber technique. Soil temperature, pH, and redox potential (Eh) and other soil physico-chemical and biological properties that have a potential role in GHG emission were also assessed. The lowest CH4 flux was observed in IWD treatment. The highest CH4 but lowest N2O flux was observed in RDF thus portraying a tradeoff relationship among these two GHGs. The highest N2O flux was observed in AS. Changes in Eh strongly altered CH4 and N2O emissions. The CH4 flux for the growing season varied from 62.5 to 86.3 kg ha-1 with an average of 72.4 kg ha-1. The average N2O flux was 0.89 kg ha-1 with values fluctuating between 0.72 - and 1.08 kg ha-1. The findings of this study could assist in understanding the factors affecting the source, production, and sink of these two important GHGs. IWD, along with judicious N-based fertilizer use, could provide significant respite from GHG emissions in rice-based agriculture. These climate-smart strategies not only reduce emissions but also have the potential to improve yield.

Silica sources for arsenic mitigation in rice: machine learning-based predictive modeling and risk assessment.

Arsenic (As) is a well-known human carcinogen, and the consumption of rice is the main pathway for the South Asian people. The study evaluated the impact of the amendments involving CaSiO3, SiO2 nanoparticles, silica solubilizing bacteria (SSB), and rice straw compost (RSC) on mitigation of As toxicity in rice. The translocation of As from soil to cooked rice was tracked, and the results showed that RSC and its combination with SSB were the most effective in reducing As loading in rice grain by 53.2%. To determine the risk of dietary exposure to As, the average daily intake (ADI), hazard quotient (HQ), and incremental lifetime cancer risk (ILCR) were computed. The study observed that the ADI was reduced to one-third (0.24 µg kg-1bw) under RSC+SSB treatments compared to the control. An effective prediction model was established using random forest model and described the accumulation of As by rice grains depend on bioavailable As, P, and Fe which explained 48.5, 5.07%, and 2.6% of the variation in the grain As, respectively. The model anticipates that to produce As benign rice grain, soil should have P and Fe concentration more than 30 mg kg-1 and 12 mg kg-1, respectively if soil As surpasses 2.5 mg kg-1.

Marine estuaries act as better sink for greenhouse gases during winter in undisturbed mangrove than degraded ones in Sundarban, India.

The estuaries provide the key pathway for travelling carbon across the land-ocean interfaces and behave as both source and sink of greenhouse gases (GHGs) in water-atmosphere systems. The sink-source characteristics of estuaries for GHGs vary spatially. The primary driving factors are adjacent ecologies (agriculture, aquaculture, etc.) and proximities to the sea. To study the sink-source characteristics of estuaries for GHGs (methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2)), the water samples were collected from 53 different locations in the estuaries for estimation of dissolved GHGs concentration and air-water GHGs exchanges. The locations represent five zones (Zone I, II, III, IV and V) based on the type and degradation status of mangroves (degraded and undisturbed), anthropogenic activities, and distance from the sea. Zone I, III, V represents to the degraded mangroves far from sea, whereas, Zone II, IV surrounded by undisturbed mangroves and nearer to sea. The average dissolved CH4 concentrations were higher in the estuaries which were adjacent to degraded mangroves (154.4 nmol L-1) than undisturbed mangroves (81.7 nmol L-1). Further, the average dissolved N2O concentrations were 48% higher in the estuaries nearer to degraded mangroves than that of undisturbed ones. Among the degraded mangrove sites, the dissolved CO2 concentrations were higher at Zone I (30.1 µmol L-1) followed by Zone III and IV, whereas in undisturbed sites, it was higher in Zone IV (22.3 µmol L-1) than Zone II (17.6 µmol L-1). Among the 53 locations, 36, 51 and 33 locations acted as a sink (negative value of exchanges) for CH4, N2O and CO2, respectively. The higher sink potential for CH4 was recorded to those estuaries adjacent to undisturbed mangroves (-791.69 µmol m-2 d-1) than the degraded ones (-23.18 µmol m-2 d-1). Similarly, the average air-water N2O and CO2 exchanges were more negative in the estuaries which were nearer to undisturbed mangroves indicating higher sink potential. The pH, and salinity of the estuary water were negatively correlated with air-water CH4 and N2O exchanges, whereas those were positively correlated with CO2 exchanges. Significantly lower dissolved GHGs and air-water GHGs exchange was observed in the estuaries adjacent to the undisturbed mangrove as compared to the degraded mangrove. The reason behind higher sink behaviours of estuaries nearer to undisturbed mangroves are higher intrusion of seawater, less nutrient availability, higher salinity, low carbon contents and alkaline pH compared to estuaries adjacent to degraded mangroves and far from sea.

Trichoderma-mediated rice straw compost promotes plant growth and imparts stress tolerance.

Rice straw burning is causing huge economic losses and environmental hazards. Microbial mediated ex situ composting could be a viable solution which would not only reduce the straw burning but also will enrich nutrition to the soil. Strains of Trichoderma isolated from tree bark were tested to decompose rice straw efficiently, and the Trichoderma-mediated rice straw compost was used subsequently to improve rice growth. Two isolates of Trichoderma reesei (NRRIT-26 and NRRIT-27) decomposed the straw by producing higher decomposing enzymes, like total cellulase (≥ 1.87 IU mL-1), endoglucanase (≥ 0.75 IU mL-1), xylanase (≥ 163.49 nkat mL-1), and laccase (≥ 11.75 IU mL-1). Trichoderma decomposed rice straw compost had higher nutrient contents (1.97% N, 2.04% K, and 0.88% P) and optimum C/N ratio (28:2) as compared to control. The Trichoderma decomposed rice straw as a nutrient reduced the mean germination time (2.2 days as compared to 4 days in control) and enhanced the seedling vigor and total chlorophyll content in rice. Expression of defense enzymes, like catalase (≥ 200% both in shoot and root), peroxidase (≥ 180% in root and ≥ 300% in shoot), and superoxide dismutase (≥ 160% in root and ≥ 90% in shoot), were higher in treated plants as compared to control indicating higher stress tolerance ability to crops. We conclude that the Trichoderma-mediated rice straw management is a viable option and has the potential to reduce straw burning, and at the same time, the compost could enrich soil fertility and impart intrinsic stress tolerance to rice.

Seed Biopriming With Trichoderma Strains Isolated From Tree Bark Improves Plant Growth, Antioxidative Defense System in Rice and Enhance Straw Degradation Capacity.

This study is a unique report of the utilization of Trichoderma strains collected from even tree barks for rice plant growth, its health management, and paddy straw degradation. Seven different spp. of Trichoderma were characterized according to morphological and molecular tools. Two of the isolated strains, namely Trichoderma hebeiensis and Trichoderma erinaceum, outperformed the other strains. Both of the strains controlled four important rice pathogens, i.e., Rhizoctonia solani (100%), Sclerotium oryzae (84.17%), Sclerotium rolfsii (66.67%), and Sclerotium delphinii (76.25%). Seed bio-priming with respective Trichoderma strains reduced the mean germination time, enhanced the seedling vigor and total chlorophyll content which could be related to the higher yield observed in two rice varieties; Annapurna and Satabdi. All the seven strains accelerated the decomposition of rice straw by producing higher straw degrading enzymes like total cellulase (0.97-2.59 IU/mL), endoglucanase (0.53-0.75 IU/mL), xylanase (145.35-201.35 nkat/mL), and laccase (2.48-12.60 IU/mL). They also produced higher quantities of indole acetic acid (19.19-46.28 µg/mL), soluble phosphate (297.49-435.42 µg/mL), and prussic acid (0.01-0.37 µg/mL) which are responsible for plant growth promotion and the inhibition of rice pathogen populations. Higher expression of defense enzymes like catalase (≥250% both in shoot and root), peroxidase (≥150% in root and ≥100% in shoot), superoxide dismutase (≥ 150% in root and ≥100% in shoot), polyphenol oxidase (≥160% in shoot and ≥120% in shoot), and total phenolics (≥200% in root and ≥250% in shoot) as compared to the control indicates stress tolerance ability to rice crop. The expression of the aforementioned enzymes were confirmed by the expression of corresponding defense genes like PAL (>3-fold), DEFENSIN (>1-fold), POX (>1.5-fold), LOX (>1-fold), and PR-3 (>2-fold) as compared to the non-treated control plants. This investigation demonstrates that Trichoderma strains obtained from tree bark could be considered to be utilized for the sustainable health management of rice crop.

Structural diversity and efficacy of culturable cellulose decomposing bacteria isolated from rice-pulse resource conservation practices.

The diversity of cellulolytic bacteria from the rice-pulse system can be sourced for identification of efficient cellulose decomposing microbial strains. In the present study, the abundance, structural diversity, and cellulolytic potential of the culturable bacterial community were studied in 5-year old rice-pulse system under different resource conservation technologies. Higher cellulose (68% more) and xylanase (35% more) activities were observed under zero tilled soil. The populations of cellulolytic bacteria were significantly higher (44%) in zero tillage (ZT) treatment than those of conventional practice. Results revealed that the cellulolytic bacterial diversity was found to be significantly higher under ZT practice, but the present population may not be sufficient for effective recycling of organic wastes in this system. Out of 290 bacterial isolates, 20 isolates had significantly higher cellulolytic activities, of which the top three superior isolates were received from ZT practice. The cellulolytic bacterial diversity based on 16S rDNA sequencing data revealed that the Firmicutes was the most dominant phyla and the Bacillus spp. were the common genus, the observation also showed that there were 17 different haplotypes were recorded among 20 isolates of cellulolytic bacteria. The present findings indicated that long-term ZT in the rice-pulse system could be a unique source for efficient cellulose decomposing bacteria and further the efficient bacterial strains isolated from this system can be used as efficient bioinoculants for in situ as well as ex-situ decomposition of rice straw particularly in conservation agriculture.

Novel Trichoderma strains isolated from tree barks as potential biocontrol agents and biofertilizers for direct seeded rice.

This study is the first time report of utilization of Trichoderma spp. isolated from different tree bark from Odisha state of India for rice crop health management and higher productivity. Six isolates of Trichoderma spp. were identified based on the morphological characteristics and species determination was performed by molecular assays. One of the isolated strains determined as Trichoderma erinaceum outperformed others. Trichoderma erinaceum controlled three soil borne plant pathogens i.e. Rhizoctonia solani, Sclerotium rolfsii and Sclerotium oryzae effectively under controlled condition and R. solani and Helminthosporium oryzae under filed condition. Seed treatments with the formulated isolates improved the germination rate of rice and enhanced vigour. These parameters along with higher chlorophyll content could be related to higher yield observed in two rice varieties; Karuna and Sahabhagidhan. Among the six isolates tested, Trichoderma erinaceum treatment recorded highest yield. Significantly higher expression of some stress related enzymes was observed in Trichoderma treated plants which helped in better crop growth both under biotic and abiotic stresses. These isolates helped both the varieties to accumulate more nutrients. This study proves that Trichoderma erinaceum obtained from tree bark may be incorporated in integrated rice crop management both as biocontrol agent and biofertilizer.

Greenhouse gas emissions and energy exchange in wet and dry season rice: eddy covariance-based approach.

Lowland tropical rice-rice system has a unique micrometrological characteristic that affects both energy component and net ecosystem energy. Periodic and seasonal variations of methane (CH4), carbon dioxide (CO2), and energy exchange from irrigated lowland rice-rice ecosystem were studied using open-path eddy covariance (EC) system during the dry (DS) and wet (WS) seasons in 2015. Concurrently, the manual chamber method was employed in nitrous oxide (N2O) measurement efflux. Cumulative net ecosystem carbon exchange (NEE) was observed highest (- 232.55 g C m-2) during the WS and lowest (- 14.81 g C m-2) during wet fallow (WF). Similarly, the cumulative net ecosystem methane exchange (NEME) was found highest (13,456.5 mg CH4 m-2) during the WS and lowest (2014.3 mg CH4 m-2) during the WF. Surface energy fluxes, i.e., sensible (Hs) and latent heat (LE) fluxes, showed a similar trend. With the advancement of time, the ratio of ecosystem respiration (Re) and gross primary production (GPP) increased. The cumulative global warming potential (GWP) for the two cropping seasons including two fallows was 13,224.1 kg CO2 equivalent ha-1. The GWP and NEME showed a similar trend as soil enzymes and labile carbon pools in both seasons (except GWP at the harvesting stage in the wet season). The mean NEE exhibited a more negative value with decrease in labile pools from panicle initiation to harvesting stage in the WS. Soil labile C and soil enzymes can be used as an indicator of NEE, NEME, and GWP in lowland rice ecology. Graphical abstract Schematic presentation of GHG emission and energy exchange in lowland rice.

Post-flood nitrogen and basal phosphorus management affects survival, metabolic changes and anti-oxidant enzyme activities of submerged rice (Oryza sativa).

Flooding is one of the major harmful abiotic stresses in the low lying areas of Asia and crop losses due to submergence are considerably high. Along with plant breeding techniques, agronomic management options in general and nutrient management in particular should be taken into consideration. Response of Sub 1 and non-Sub1 cultivars of rice to post-flood nitrogen (N) management under variable flood water was compared at maximum tillering stage. Submergence tolerance on survival, leaf senescence, metabolic changes, and anti-oxidant enzymatic activities were evaluated. Sub1 cultivars proved their superiority over IR-20 in terms of significantly higher survival, anti-oxidant enzymes and lower metabolic changes. Turbid water resulted in lower survival because of poor light transmission, chlorophyll retention and silt deposition. Basal phosphorus reduced the elongation, senescence and ethylene accumulation. Post-flood foliar spray of urea substantially increased the chlorophyll, soluble sugars and extenuated ethylene accumulation resulting in significantly higher survival. These nutrient management options can provide opportunities for better survival and productivity even under turbid water, helping farmers to cope with the existing problems in flood-prone areas.